PPDB

 The Plant Proteome Database

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AT4G13170.1   Ribosomal protein L13 family protein
Lab Annot. 60S ribosomal protein L13A (RPL13aC)
Mapman: 29.2.1.2.2.513 protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L13A
Curated Location cytosol
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G48760.1 11Arabidopsis thaliana6E-143206929743 (35)_
AT5G48760.2 11Arabidopsis thaliana6E-143206929741 (33)_
AT3G24830.1 11Arabidopsis thaliana2E-1412069195213 (177)_
Os03g54890.1 7Oryza sativa2E-128206829149 (49)_
Os07g01870.1 7Oryza sativa1E-127206809142 (42)M
Os03g54890.2 7Oryza sativa2E-110206748149 (49)_
Zm00001eb057690_P001 agpv5Zea mays2E-13020683920 (0)_
GRMZM2G090422_P01 3.21Zea mays2E-1302068392105 (99)_
v1_GRMZM2G090422_P01 4a53Zea mays2E-130206839281 (79)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Ribosomal_L13(3)
TargetP: Cytoplasm (Class 4 C0.288; M0.107; S0.037; _0.567)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 206 aa (-cTP 181)
Molecular Weight 23.63 kDA(-cTP )
PI 10.39(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
355Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
356Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1406Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1413Detail       leaf [A. thaliana] total leaf tissue -114 rep1tR1 wild-type
1414Detail       leaf [A. thaliana] total leaf tissue -114 rep1tR2 wild-type
1415Detail       leaf [A. thaliana] total leaf tissue 1.14 rep 1.1 clpr2-1
1416Detail       leaf [A. thaliana] total leaf tissue 1.14 rep 1.2 clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1422Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1423Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1441Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 3)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1931Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2243Detail       seedlings [A. thaliana] total tissue gfs9
2245Detail       seedlings [A. thaliana] total tissue wild-type
2259Detail       leaf [A. thaliana] total seedlings gfs9
2300Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 17934214(cytosolic ribosome)
17432890(leaf total membranes)
18814325(cotyledons)
19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)

Comparative Proteomics Data

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