PPDB

PPDB	The Plant Proteome Database

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AT4G12980.1 Auxin-responsive family protein

Lab Annot.

Auxin-responsive protein
Mapman: 17.2.3 hormone metabolism.auxin.induced-regulated-responsive-activated

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G25290.1 11 Arabidopsis thaliana 0 383 75 85 0 (0) S
AT3G25290.2 11 Arabidopsis thaliana 0 383 75 85 0 (0) S
AT5G47530.1 11 Arabidopsis thaliana 4E-119 379 48 67 0 (0) S
Os03g09900.1 7 Oryza sativa 1E-125 367 52 66 0 (0) S
Os08g41280.1 7 Oryza sativa 7E-116 358 50 66 26 (26) S
Os09g32470.1 7 Oryza sativa 2E-109 356 49 67 0 (0) S
Zm00001eb401120_P002 agpv5 Zea mays 2E-116 368 48 64 0 (0) S
GRMZM2G050159_P01 3.21 Zea mays 6E-116 368 48 64 0 (0) C
v1_GRMZM2G050159_P01 4a53 Zea mays 6E-116 368 48 64 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Cytochrom_B561(1) DUF2427(2) DUF568(2)
TargetP:	Secreted (Class 1 C0.008; M0.023; S0.909; _0.020)
Predotar:
Subcel. Location:
TM-HMM prediction:	5 TMs
Aramemnon:	5 TMs
TAT position:
Length	394 aa (-cTP 364)
Molecular Weight	42.23 kDA(-cTP )
PI	9.73(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1395	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19036721(sterol dependent detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19036721(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19114538(guard cells Arabidopsis leaf)
20843791(DRM-enriched plasmamembrane)
21988472(vacuole (unfiltered data))

Comparative Proteomics Data