PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT4G12910.1   serine carboxypeptidase-like 20

Lab Annot. serine carboxypeptidase-like 20 (SCPL20)
Mapman: 29.5.5.5.1* protein.degradation.serine protease.SC.S10
Curated Location peroxisome (Pubmed: 24130194 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G12910.2 11Arabidopsis thaliana04551001000 (0)S
AT3G25420.1 11Arabidopsis thaliana049674820 (0)S
AT2G22990.1 11Arabidopsis thaliana2E-1154733857153 (94)S
Os12g15470.2 7Oryza sativa049162746 (6)S
Os12g15470.1 7Oryza sativa050260731 (1)S
Os04g25560.1 7Oryza sativa0470597550 (50)S
GRMZM2G029641_P01 3.21Zea mays047258742 (2)M
v1_GRMZM2G029641_P01 4a53Zea mays047258742 (2)M
Zm00001eb420820_P002 agpv5Zea mays047258740 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Peptidase_S10(1)
TargetP: Secreted (Class 1 C0.003; M0.028; S0.992; _0.037)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 497 aa (-cTP 471)
Molecular Weight 55.83 kDA(-cTP )
PI 5.84(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1432Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
2249Detail       seedlings [A. thaliana] total tissue gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

15539469(vacuole)
19525416(leaf (wt and clpr4-1 mutant))
WallDB-E.Jamet(cell wall reference proteome)
21173025(root proteome)
21413152(Xylem-sap (BrassicaOleracea))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help