PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT4G12740.1 HhH-GPD base excision DNA repair family protein

Lab Annot.

adenine-DNA glycosylase-related / MYH-related
Mapman: 28.1 DNA.synthesis/chromatin structure

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G12740.3 11 Arabidopsis thaliana 0 630 96 96 0 (0) C
AT4G12740.2 11 Arabidopsis thaliana 0 542 94 95 0 (0) C
AT2G31450.1 11 Arabidopsis thaliana 7E-06 146 28 49 0 (0) M
Os12g10850.1 7 Oryza sativa 1E-135 436 49 66 0 (0) C
Os12g10900.1 7 Oryza sativa 1E-54 215 53 61 0 (0) C
Os12g10910.1 7 Oryza sativa 8E-52 198 44 67 0 (0) C
GRMZM2G425986_P02 3.21 Zea mays 2E-138 435 50 65 0 (0) C
v1_GRMZM2G425986_P02 4a53 Zea mays 2E-138 435 50 65 0 (0) C
Zm00001eb411200_P001 agpv5 Zea mays 2E-138 435 50 65 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Adaptin_binding(1) BORG_CEP(1) Borrelia_P83(1) BUD22(1) Cid2(1) DDHD(1) dsRBD2(1
TargetP:	Chloroplast (Class 3 C0.722; M0.243; S0.014; _0.028)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:	1 TMs
TAT position:
Length	630 aa (-cTP 572)
Molecular Weight	72.00 kDA(-cTP 65.33)
PI	6.01(-cTP 5.33)

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
527	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt1)
875	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
876	Detail								leaf [A. thaliana]	chloroplast thylakoid membrane	wild-type
1432	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data