PPDB

 The Plant Proteome Database

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AT4G12680.1   transmembrane protein
Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G40640.1 11Arabidopsis thaliana7E-16253946641 (1)S
AT3G27390.1 11Arabidopsis thaliana7E-16154346630 (0)S
AT3G27390.2 11Arabidopsis thaliana7E-16154346630 (0)S
Os06g19630.2 7Oryza sativa055861770 (0)S
Os06g19630.1 7Oryza sativa044658770 (0)_
Os04g40700.1 7Oryza sativa8E-16655345620 (0)S
GRMZM2G353729_P01 3.21Zea mays057556740 (0)S
v1_GRMZM2G353729_P01 4a53Zea mays057556741 (1)S
Zm00001eb281140_P001 agpv5Zea mays057556740 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: MS_channel(1)
TargetP: Secreted (Class 3 C0.000; M0.038; S0.959; _0.496)
Predotar:
Subcel. Location:
TM-HMM prediction: 6 TMs
Aramemnon: 5 TMs
TAT position:
Length 575 aa (-cTP 549)
Molecular Weight 64.13 kDA(-cTP )
PI 8.60(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1209Detail       leaf [A. thaliana] total leaf tissue StrepII-tagged Clp transgenic

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help