PPDB

 The Plant Proteome Database

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AT4G12450.1   zinc finger (C2H2 type) family protein
Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G22560.1 11Arabidopsis thaliana1E-10828263720 (0)C
AT1G62520.1 11Arabidopsis thaliana1E-7829750590 (0)_
AT5G54630.1 11Arabidopsis thaliana7E-2422634490 (0)_
Os02g44280.1 7Oryza sativa9E-3431536460 (0)_
Os04g59380.1 7Oryza sativa3E-2622334500 (0)_
Os11g06840.1 7Oryza sativa2E-2521735470 (0)_
v1_GRMZM2G430392_P01 4a53Zea mays2E-4029642500 (0)M
Zm00001eb249710_P001 agpv5Zea mays2E-4029642500 (0)M
GRMZM2G430392_P01 3.21Zea mays2E-4029642500 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM:
TargetP: Cytoplasm (Class 3 C0.115; M0.150; S0.007; _0.665)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 277 aa (-cTP 190)
Molecular Weight 29.98 kDA(-cTP )
PI 9.37(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1331Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
1332Detail       leaf [A. thaliana] chloroplast thylakoid membraneshoot1
1346Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 2)
1349Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 2)
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1443Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 2)
1445Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 1)
1448Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 1)
1516Detail       leaf [A. thaliana] wild-type
1524Detail       leaf [A. thaliana] wild-type
1611Detail       leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1620Detail        [A. thaliana] m48
1621Detail        [A. thaliana] m48
1630Detail       Rosettes [A. thaliana] total leaf tissue thylakoid + envelopek1xk3
1831Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Normal light
1833Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1933Detail       leaf [A. thaliana] chloroplast wild-type
1986Detail       leaf [A. thaliana] plastid Prep1_Prep2
1987Detail       leaf [A. thaliana] plastid Prep1_Prep2

* For details about the exprimental sources click here.

Published Proteomics Data

 19888209(80S polysomal fraction)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help