PPDB

The Plant Proteome Database

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AT4G12340.1   copper ion binding protein

Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location not plastid (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os05g01300.1 7Oryza sativa6E-3217540627 (7)_
GRMZM2G098237_P01 3.21Zea mays6E-2817042612 (2)_
v1_GRMZM2G098237_P01 4a53Zea mays6E-2817042610 (0)_
Zm00001eb356210_P001 agpv5Zea mays6E-2817042610 (0)_

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: CHCH(1) DUF1690(2)
TargetP: Cytoplasm (Class 5 C0.431; M0.047; S0.062; _0.589)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 170 aa (-cTP 117)
Molecular Weight 19.44 kDA(-cTP )
PI 9.10(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1446Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 2)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19376835(leaf phosphoproteins)
20018591(weak Cu-2+ binding (mitochondria - cell culture))
21841088(mitochondria (2DE native gel))
21173025(root proteome)
21768351(Leaf-Phosphoproteome)
21472856(mitochondria-LC-MS/MS-uncurated)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help