PPDB

 The Plant Proteome Database

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AT4G11960.1   PGR5-like B
Lab Annot. PGRL1B
Mapman: 1.1.40 PS.lightreaction.cyclic electron flow-chlororespiration
Curated Location thylakoid-integral (Pubmed: 23198870 18243102 18431481 ) (supported by in-house exprements)

TAIR curated location: thylakoid membrane (sensu Viridiplantae)15322131
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G11960.2 11Arabidopsis thaliana025710010049 (43)_
AT4G22890.3 11Arabidopsis thaliana03218088633 (560)C
AT4G22890.1 11Arabidopsis thaliana03218088634 (561)C
Os08g41460.1 7Oryza sativa2E-145251758934 (34)C
Os08g41460.2 7Oryza sativa2E-145251758934 (34)C
Os08g41460.10 7Oryza sativa2E-145251758918 (18)C
GRMZM5G885392_P01 3.21Zea mays2E-147304678095 (95)C
Zm00001eb305640_P002 agpv5Zea mays2E-14730467802 (2)C
v1_GRMZM2G174440_P01 4a53Zea mays3E-147304668092 (92)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: A2L_zn_ribbon(2) DUF3920(1) NRDD(2) Ribosomal_S27e(1) SHOCT(2) Terminase_GpA(2)
TargetP: Chloroplast (Class 3 C0.904; M0.398; S0.005; _0.017)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 2 TMs
Aramemnon: 2 TMs
TAT position:
Length 313 aa (-cTP 264)
Molecular Weight 34.91 kDA(-cTP 29.41)
PI 5.05(-cTP 4.45)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
105Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
107Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
876Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
1122Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type
1345Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 1)
1346Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 2)
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1349Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 2)
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1409Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 wild-type
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
1441Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 3)
1445Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 1)
1446Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 2)
1447Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 3)
1448Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 1)
1449Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 2)
1450Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1507Detail        [A. thaliana] wild-type
1557Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1583Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1611Detail       leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1612Detail       Natural Senescence leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1615Detail       Natural Senescence leaf [A. thaliana]  
1617Detail        [A. thaliana] m48
1619Detail        [A. thaliana] m48
1620Detail        [A. thaliana] m48
1621Detail        [A. thaliana] m48
1622Detail        [A. thaliana] m48
1745Detail        [A. thaliana] Col-0
1765Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1829Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Fluctuating light
1830Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Normal light
1832Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Normal light
1983Detail       leaf [A. thaliana] plastid wild-type
1985Detail       leaf [A. thaliana] plastid wild-type
1986Detail       leaf [A. thaliana] plastid Prep1_Prep2
1987Detail       leaf [A. thaliana] plastid Prep1_Prep2
1988Detail       leaf [A. thaliana] plastid Prep1_Prep2
2029Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2132Detail       leaf [A. thaliana] chloroplast fractionation MSH1

* For details about the exprimental sources click here.

Published Proteomics Data

 15322131(Thylakoid-stripped)
17216043(leaf)
19995723(chloroplast reference proteome)
21768351(Leaf-Phosphoproteome)
21515685(GreenCut2)

Comparative Proteomics Data

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