PPDB

 The Plant Proteome Database

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AT4G11820.1   hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase
Lab Annot. hydroxymethylglutaryl-CoA synthase (HMGS) (MVA - step 2)
Mapman: 16.1.2.2 secondary metabolism.isoprenoids.mevalonate pathway.HMG-CoA synthase
Curated Location cytosol
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G11820.3 11Arabidopsis thaliana04061001000 (0)_
AT4G11820.2 11Arabidopsis thaliana040610010059 (30)_
Os03g02710.1 7Oryza sativa040774860 (0)_
Os09g34960.1 7Oryza sativa041274858 (8)_
Os08g43170.1 7Oryza sativa041273867 (7)_
Zm00001eb103070_P003 agpv5Zea mays041674850 (0)_
AC199782.5_FGP002 3.21Zea mays0416748517 (16)_
v1_AC199782.5_FGP002 4a53Zea mays0416748512 (12)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: ACP_syn_III_C(2) HMG_CoA_synt_C(1) HMG_CoA_synt_N(1) SpaA(2)
TargetP: Cytoplasm (Class 2 C0.092; M0.057; S0.158; _0.882)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 406 aa (-cTP 404)
Molecular Weight 45.21 kDA(-cTP )
PI 6.76(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1209Detail       leaf [A. thaliana] total leaf tissue StrepII-tagged Clp transgenic
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2172Detail       leaf [A. thaliana] stroma Clp gst against clpF/clpS1 stroma
2173Detail       leaf [A. thaliana] stroma Clp gst clpF against clpF stroma
2214Detail       leaf [A. thaliana] total leaf tissue Clp P5 st
2216Detail       leaf [A. thaliana] total leaf tissue Clp P5 st
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2260Detail       leaf [A. thaliana] stroma Clp wild-type
2261Detail       leaf [A. thaliana] stroma Clp clp trap
2289Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2297Detail        [A. thaliana] Clp C1 WT
2306Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 19200160(flower-stage 12)
19114538(guard cells Arabidopsis leaf)
21533090(plasmodesmata-crude)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data

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