PPDB

 The Plant Proteome Database

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AT4G11570.1   Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Lab Annot. ARPP phosphatase AtcpFHy2 (high in clpc1, clps1)
Mapman: 18.3 Co-factor and vitamine metabolism.riboflavin
Curated Location plastid stroma (Pubmed: 27490826 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G11570.2 11Arabidopsis thaliana0373100100243 (23)_
AT3G10970.1 11Arabidopsis thaliana2E-23214295298 (6)C
AT3G10970.2 11Arabidopsis thaliana4E-23214295239 (2)C
Os09g39560.1 7Oryza sativa5E-13534955730 (0)C
Os04g47020.3 7Oryza sativa2E-7330642620 (0)C
Os04g47020.2 7Oryza sativa2E-7330642620 (0)C
GRMZM2G027166_P01 3.21Zea mays2E-14031960770 (0)C
GRMZM2G027166_P04 3.21Zea mays2E-14031960770 (0)C
v1_GRMZM2G027166_P03 4a53Zea mays2E-14031960770 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: HAD_2(1) Hydrolase(1) Hydrolase_like(1)
TargetP: Cytoplasm (Class 5 C0.418; M0.083; S0.051; _0.588)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 373 aa (-cTP 303)
Molecular Weight 42.20 kDA(-cTP )
PI 6.00(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1461Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 1)
1462Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 2)
1463Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 3)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1526Detail       leaf [A. thaliana] co-IP GST-ClpS 100ug bait stromaclpc1 x clps (rep. 2)
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1948Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1949Detail       leaf [A. thaliana] stroma ClpS stromaclpS
2263Detail       leaf [A. thaliana] stroma Clp Clp C1 trap
2265Detail       leaf [A. thaliana] stroma Clp stromaClp C1 trap
2267Detail       leaf [A. thaliana] stroma Clp Clp C1 TRAP
2289Detail        [A. thaliana] Clp C1 TRAP
2291Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 21515685(GreenCut2)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help