PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT4G11080.1   HMG (high mobility group) box protein

Lab Annot. high mobility group (HMG1/2) protein
Mapman: 27.3.53 RNA.regulation of transcription.High mobility group (HMG) family
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G23800.2 11Arabidopsis thaliana045177860 (0)C
AT4G23800.1 11Arabidopsis thaliana045178862 (2)C
AT1G20696.2 11Arabidopsis thaliana2E-11118375413 (13)C
Os02g15810.1 7Oryza sativa3E-13341854720 (0)M
Os09g37910.4 6Oryza sativa2E-087435582 (2)C
Os09g37910.2 6Oryza sativa3E-087435582 (2)_
Zm00001eb238060_P001 agpv5Zea mays1E-13141657750 (0)M
v1_GRMZM2G060253_P01 4a53Zea mays1E-13141657750 (0)M
GRMZM2G060253_P01 3.21Zea mays1E-13141657750 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: HMG_box(4) HMG_box_2(4)
TargetP: Chloroplast (Class 4 C0.780; M0.082; S0.101; _0.382)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 446 aa (-cTP 413)
Molecular Weight 52.30 kDA(-cTP 48.71)
PI 9.22(-cTP 9.10)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
622Detail       leaf [A. thaliana] total leaf tissue wild-type
1469Detail       leaf [A. thaliana] co-IP GST-ClpS stroma clpc1 x clps (rep. 3)

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help