PPDB

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AT4G10840.2 Tetratricopeptide repeat (TPR)-like superfamily protein

Lab Annot.

Tetratricopeptide repeat (TPR) protein
Mapman: 26.33* misc. tetratricopeptide repeat (TPR)

Curated Location

not plastid

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G10840.1 11 Arabidopsis thaliana 0 531 100 100 149 (86) C
AT3G27960.1 11 Arabidopsis thaliana 0 513 54 72 7 (7) _
AT3G27960.3 11 Arabidopsis thaliana 0 513 54 72 0 (0) _
Os02g47880.2 7 Oryza sativa 0 485 64 79 16 (16) _
Os02g47880.1 7 Oryza sativa 0 485 64 79 16 (16) _
Os02g01960.1 7 Oryza sativa 0 488 63 78 11 (11) C
v1_GRMZM2G147377_P02 4a53 Zea mays 0 459 63 79 2 (2) _
Zm00001eb252260_P003 agpv5 Zea mays 0 459 63 79 0 (0) _
Zm00001eb252260_P001 agpv5 Zea mays 0 459 63 79 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	ANAPC3(4) DUF2225(2) DUF3856(5) DUF4810(1) Fis1_TPR_C(1) Foie-gras_1(2) PPR(4) R
TargetP:	Chloroplast (Class 2 C0.874; M0.028; S0.008; _0.168)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	531 aa (-cTP 466)
Molecular Weight	57.33 kDA(-cTP 50.53)
PI	5.11(-cTP 4.82)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1401	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1431	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
2012	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2248	Detail								seedlings [A. thaliana]	total tissue	wild-type
2289	Detail								[A. thaliana]		Clp C1 TRAP
2291	Detail								[A. thaliana]		Clp C1 TRAP
2297	Detail								[A. thaliana]		Clp C1 WT
2298	Detail								[A. thaliana]		Clp C1 WT
2303	Detail								[A. thaliana]		Clp C1 WT
2306	Detail								[A. thaliana]		Clp C1 TRAP
2307	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

17317660(Plasma Membrane proteome)
19525416(leaf (wt and clpr4-1 mutant))
19376835(leaf phosphoproteins)
21533090(plasmodesmata-crude)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data