PPDB

The Plant Proteome Database

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AT4G10110.1   RNA-binding (RRM/RBD/RNP motifs) family protein

Lab Annot. RNA recognition motif (RRM)-containing protein
Mapman: 27.4 RNA.RNA binding
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G18510.1 11Arabidopsis thaliana5E-158333726 (6)_
AT5G44200.1 11Arabidopsis thaliana2E-06101315110 (4)M
AT5G44200.2 11Arabidopsis thaliana2E-0610131518 (2)M
Os05g35274.2 7Oryza sativa7E-4917951630 (0)_
Os05g35274.5 7Oryza sativa1E-408373890 (0)_
Os01g65530.1 7Oryza sativa4E-408875870 (0)_
Zm00001eb348870_P001 agpv5Zea mays2E-4718051630 (0)_
Zm00001eb288540_P005 agpv5Zea mays3E-4617850640 (0)_
GRMZM2G175676_P05 3.21Zea mays3E-4617850640 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: KapB(1) RRM_1(1)
TargetP: Cytoplasm (Class 2 C0.028; M0.270; S0.076; _0.891)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 173 aa (-cTP 163)
Molecular Weight 19.34 kDA(-cTP )
PI 6.59(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))
20706207(cell cycle interactome (cell culture))
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help