PPDB

 The Plant Proteome Database

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AT4G10040.1   cytochrome c-2
Lab Annot. CYTC-2 (CYTOCHROME C-2); electron carrier
Mapman: 9.6 mitochondrial electron transport / ATP synthesis.cytochrome c
Curated Location mitochondria (Pubmed: 12970493 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G22840.1 11Arabidopsis thaliana5E-74112929365 (49)_
AT1G22840.2 11Arabidopsis thaliana3E-5184899134 (26)_
Os05g34770.1 7Oryza sativa1E-73112909514 (14)_
Os01g66180.1 7Oryza sativa1E-5411272800 (0)_
Os01g66180.2 7Oryza sativa1E-408470800 (0)_
GRMZM2G010348_P01 3.21Zea mays1E-72112919338 (38)_
Zm00001eb349110_P001 agpv5Zea mays1E-7211291930 (0)_
v1_GRMZM2G010348_P01 4a53Zea mays1E-72112919325 (25)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Cytochrom_C(1) Cytochrom_C550(2) Cytochrome_CBB3(1)
TargetP: Cytoplasm (Class 3 C0.286; M0.082; S0.035; _0.866)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 112 aa (-cTP 54)
Molecular Weight 12.24 kDA(-cTP )
PI 9.37(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
1345Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 1)
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1348Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 1)
1349Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 2)
1596Detail        [A. thaliana]  
1612Detail       Natural Senescence leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1617Detail        [A. thaliana] m48
1618Detail        [A. thaliana] m48
1619Detail        [A. thaliana] m48
1621Detail        [A. thaliana] m48
1622Detail        [A. thaliana] m48
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2021Detail       leaf [A. thaliana] total leaf tissue  
2046Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2053Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2054Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2191Detail        [A. thaliana] plastid stroma stromaP3-trap-strepII 40
2316Detail       leaf [A. thaliana] PG plastoglobule 
2317Detail       leaf [A. thaliana] PG plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

 19546170(mature pollen grains)
20018591(weak Cu-2+ binding (mitochondria - cell culture))
21311031(mitochondria)
21472856(mitochondrial-2DEgels-uncurated)
21472856(mitochondria-LC-MS/MS-uncurated)
21472856(mitochondrial-reference-proteome-Millar-Nov2011)

Comparative Proteomics Data

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