PPDB

PPDB	The Plant Proteome Database

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AT4G09730.1 RH39

Lab Annot.

DEAD box RNA helicase, RH39 (nara12) 23S rRNA processing
Mapman: 27.5* RNA.DEAD/DEAH BOX helicase

Curated Location

plastid nucleoid (Pubmed: 23198870 20561259 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G06980.1 11 Arabidopsis thaliana 8E-64 397 35 55 66 (51) C
AT3G58510.1 11 Arabidopsis thaliana 2E-51 401 31 50 208 (91) C
AT3G58510.3 11 Arabidopsis thaliana 2E-51 401 31 50 208 (91) C
Os01g08930.1 7 Oryza sativa 0 570 67 77 6 (6) M
Os03g01830.1 7 Oryza sativa 3E-64 399 33 55 14 (14) M
Os01g07740.3 7 Oryza sativa 1E-52 381 33 49 0 (0) _
GRMZM2G175867_P01 3.21 Zea mays 0 553 65 77 78 (78) M
v1_GRMZM2G175867_P02 4a53 Zea mays 0 553 65 77 59 (59) M
Zm00001eb269830_P001 agpv5 Zea mays 0 553 65 77 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DEAD(1) DNA_pol3_chi(1) Flavi_DEAD(1) HAD(2) Helicase_C(2) MEDS(2) ResIII(1) Zn_
TargetP:	Mitochondria (Class 5 C0.284; M0.349; S0.046; _0.028)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	621 aa (-cTP 575)
Molecular Weight	68.92 kDA(-cTP )
PI	9.91(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
542	Detail								leaf [A. thaliana]	stroma (FPLC) >500 kDa (HMB)	wild-type
543	Detail								leaf [A. thaliana]	stroma (FPLC) >600 kDa (HMA)	wild-type
1178	Detail								leaf [A. thaliana]	co-IP RH3 stroma	clpr2-1
1179	Detail								leaf [A. thaliana]	co-IP ClpR2 stroma	clpr2-1
1197	Detail								leaf [A. thaliana]	co-IP ClpR2 stroma	clpr2-1
1399	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1401	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1403	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1411	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.1	clpr2-1
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1424	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 1)
1426	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 3)
1453	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1454	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 2)
1482	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 1)
1484	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 2)
1486	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 3)
1525	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1999	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS1
2000	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS1
2287	Detail								[A. thaliana]		Clp C1 WT
2290	Detail								[A. thaliana]		Clp C1 TRAP
2291	Detail								[A. thaliana]		Clp C1 TRAP
2299	Detail								[A. thaliana]		Clp C1 TRAP
2300	Detail								[A. thaliana]		Clp C1 TRAP
2301	Detail								[A. thaliana]		Clp C1 TRAP
2306	Detail								[A. thaliana]		Clp C1 TRAP
2307	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
20423899(chloroplast)
21515685(GreenCut2)

Comparative Proteomics Data