PPDB

 The Plant Proteome Database

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AT4G09730.1   RH39
Lab Annot. DEAD box RNA helicase, RH39 (nara12) 23S rRNA processing
Mapman: 27.5* RNA.DEAD/DEAH BOX helicase
Curated Location plastid nucleoid (Pubmed: 23198870 20561259 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G06980.1 11Arabidopsis thaliana8E-64397355572 (49)C
AT3G58510.1 11Arabidopsis thaliana2E-514013150273 (74)C
AT3G58510.3 11Arabidopsis thaliana2E-514013150273 (74)C
Os01g08930.1 7Oryza sativa057067776 (6)M
Os03g01830.1 7Oryza sativa3E-64399335514 (14)M
Os01g07740.3 7Oryza sativa1E-5238133490 (0)_
GRMZM2G175867_P01 3.21Zea mays05536577115 (78)M
v1_GRMZM2G175867_P02 4a53Zea mays0553657759 (59)M
Zm00001eb269830_P001 agpv5Zea mays055365770 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DEAD(1) DNA_pol3_chi(1) Flavi_DEAD(1) HAD(2) Helicase_C(2) MEDS(2) ResIII(1) Zn_
TargetP: Mitochondria (Class 5 C0.284; M0.349; S0.046; _0.028)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 621 aa (-cTP 575)
Molecular Weight 68.92 kDA(-cTP )
PI 9.91(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
542Detail       leaf [A. thaliana] stroma (FPLC) >500 kDa (HMB) wild-type
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1179Detail       leaf [A. thaliana] co-IP ClpR2 stromaclpr2-1
1197Detail       leaf [A. thaliana] co-IP ClpR2 stromaclpr2-1
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1424Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 1)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1999Detail       leaf [A. thaliana] stroma ClpS stromaclpS1
2000Detail       leaf [A. thaliana] stroma ClpS stromaclpS1
2291Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
20423899(chloroplast)
21515685(GreenCut2)

Comparative Proteomics Data

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