PPDB

PPDB	The Plant Proteome Database

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AT4G09560.1 Protease-associated (PA) RING/U-box zinc finger family protein

Lab Annot.

Mapman: 29.5 protein.degradation

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G71980.1 11 Arabidopsis thaliana 1E-124 459 47 63 0 (0) S
AT1G35625.1 11 Arabidopsis thaliana 2E-118 332 53 70 0 (0) S
AT1G35630.1 11 Arabidopsis thaliana 2E-117 330 52 71 0 (0) S
Os08g01360.2 7 Oryza sativa 6E-119 385 50 64 0 (0) S
Os08g01360.1 7 Oryza sativa 6E-119 385 50 64 0 (0) S
Os03g07130.3 7 Oryza sativa 8E-115 287 57 73 0 (0) S
Zm00001eb260120_P001 agpv5 Zea mays 1E-116 329 54 68 0 (0) S
Zm00001eb260120_P003 agpv5 Zea mays 1E-116 329 54 68 0 (0) S
v1_GRMZM2G423956_P03 4a53 Zea mays 1E-116 329 54 68 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	PA(1) PHD(1) Prok-RING_4(1) zf-ANAPC11(1) zf-C3HC4(1) zf-C3HC4_2(1) zf-C3HC4_3(1
TargetP:	Secreted (Class 1 C0.025; M0.026; S0.991; _0.013)
Predotar:
Subcel. Location:
TM-HMM prediction:	2 TMs
Aramemnon:	1 TMs
TAT position:
Length	448 aa (-cTP 402)
Molecular Weight	49.72 kDA(-cTP )
PI	9.45(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data