PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT4G09350.1   Chaperone DnaJ-domain superfamily protein
Lab Annot. NDH subunit CRRJ - J-domain protein DjC85 (type 3) or NdhT
Mapman: 1.1.6 PS.lightreaction.NADH DH
Curated Location thylakoid (Pubmed: 23198870 20040542 21505067 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G80030.4 11Arabidopsis thaliana6E-126350680 (0)C
AT1G80030.2 11Arabidopsis thaliana7E-1263506889 (86)C
AT1G80030.1 11Arabidopsis thaliana7E-1263506889 (86)C
Os05g26902.1 7Oryza sativa3E-1062506131 (31)M
Os05g26914.1 6Oryza sativa3E-1062506115 (15)M
Os05g26926.1 7Oryza sativa3E-1062506131 (31)M
v1_GRMZM2G124644_P01 4a53Zea mays2E-79188628038 (38)C
Zm00001eb168470_P002 agpv5Zea mays2E-7918862800 (0)C
Zm00001eb168470_P001 agpv5Zea mays2E-7918862800 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DnaJ(1)
TargetP: Cytoplasm (Class 5 C0.269; M0.321; S0.059; _0.364)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 249 aa (-cTP 205)
Molecular Weight 28.50 kDA(-cTP )
PI 5.53(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
343Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
351Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
352Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
876Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
1409Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 wild-type
1410Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 wild-type
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1581Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1582Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1745Detail        [A. thaliana] Col-0
1765Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1828Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Fluctuating light
1829Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Fluctuating light
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2133Detail       leaf [A. thaliana] chloroplast fractionation MSH1
2316Detail       leaf [A. thaliana] PG plastoglobule 
2317Detail       leaf [A. thaliana] PG plastoglobule 
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help