PPDB

 The Plant Proteome Database

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AT4G08520.1   SNARE-like superfamily protein
Lab Annot. clathrin adaptor complex small chain protein
Mapman: 31.4 cell.vesicle transport
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G09800.1 11Arabidopsis thaliana2E-12017892972 (0)_
AT3G09800.5 11Arabidopsis thaliana2E-12017892970 (0)_
AT3G09800.4 11Arabidopsis thaliana2E-12017892970 (0)_
Os02g21250.1 7Oryza sativa3E-93177728620 (20)_
Os02g21250.2 7Oryza sativa3E-9317772869 (9)_
Os05g38610.1 7Oryza sativa9E-86175698120 (20)_
GRMZM2G314679_P06 3.21Zea mays2E-93180728424 (24)_
v1_GRMZM2G314679_P06 4a53Zea mays2E-93180728429 (28)_
Zm00001eb315530_P004 agpv5Zea mays3E-9318072840 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Clat_adaptor_s(1) OSR1_C(1)
TargetP: Cytoplasm (Class 2 C0.065; M0.082; S0.096; _0.766)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 181 aa (-cTP 127)
Molecular Weight 19.88 kDA(-cTP )
PI 4.59(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1125Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1394Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1397Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1409Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 wild-type
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1442Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 1)
1532Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP clps (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1875Detail       Total leaf [A. thaliana] total soluble wild-type
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2043Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2044Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2218Detail       Total soluble [A. thaliana] Total soluble proteins cGEP strep
2219Detail       Total soluble [A. thaliana] Total soluble proteins cGEP strep
2320Detail        [A. thaliana] Thylakoids plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

 17644812(plasma membrane - suspension cells)
19546170(mature pollen grains)
19429840(ubiquitinated or associated with ubiquitinated proteins (seedlings))
19525416(leaf (wt and clpr4-1 mutant))
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help