PPDB

The Plant Proteome Database

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AT4G08310.1   DNA ligase

Lab Annot. unknown protein
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G44780.2 11Arabidopsis thaliana1E-14643858720 (0)_
AT1G44780.1 11Arabidopsis thaliana4E-14543958720 (0)_
Os11g34190.1 7Oryza sativa2E-8542743590 (0)_
Zm00001eb113700_P001 agpv5Zea mays3E-7542342600 (0)_
GRMZM2G023585_P02 3.21Zea mays3E-7542342601 (1)_
v1_GRMZM2G023585_P02 4a53Zea mays3E-7542342600 (0)_

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Cas_Cmr5(3) CHZ(1) DEK_C(4)
TargetP: Cytoplasm (Class 2 C0.136; M0.108; S0.046; _0.926)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 504 aa (-cTP 494)
Molecular Weight 56.24 kDA(-cTP )
PI 4.90(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
19546170(mature pollen grains)
19245862(nuclear phosphoproteins (seedlings & cell culture))
19334764(plasma membrane (cell culture))
19114538(guard cells Arabidopsis leaf)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help