PPDB

 The Plant Proteome Database

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AT4G05390.1   root FNR 1
Lab Annot. Root FNR1
Mapman: 7.3 OPP.electron transfer
Curated Location plastid (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G05390.2 11Arabidopsis thaliana0378929223 (18)C
AT1G30510.2 11Arabidopsis thaliana0339859212 (10)C
AT1G30510.1 11Arabidopsis thaliana0339859213 (11)C
Os07g05400.1 7Oryza sativa037877874 (4)C
Os03g57120.1 7Oryza sativa037776862 (2)C
Os03g57120.2 7Oryza sativa4E-15629671821 (1)C
Zm00001eb299960_P002 agpv5Zea mays033581890 (0)C
Zm00001eb059850_P001 agpv5Zea mays036277860 (0)C
GRMZM2G058760_P01 3.21Zea mays0362778613 (13)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: FAD_binding_6(1) FAD_binding_9(1) NAD_binding_1(1)
TargetP: Chloroplast (Class 2 C0.781; M0.087; S0.007; _0.088)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 378 aa (-cTP 313)
Molecular Weight 42.40 kDA(-cTP 35.31)
PI 8.77(-cTP 6.68)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
99Detail       petal [B. oleracea] plastid stroma 
127Detail       leaf [A. thaliana] plastid thylakoid membranewild-type
544Detail       leaf [A. thaliana] stroma (FPLC) <600 kDa (LMA) wild-type
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1485Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 3)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1942Detail       leaf [A. thaliana] stroma WT stromawild-type
2183Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2185Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2310Detail       leaf [A. thaliana] PG plastoglobule 
2311Detail       leaf [A. thaliana] PG plastoglobule 
2312Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2313Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2316Detail       leaf [A. thaliana] PG plastoglobule 
2317Detail       leaf [A. thaliana] PG plastoglobule 
2318Detail       leaf [A. thaliana] PG plastoglobule 
2319Detail       leaf [A. thaliana] PG plastoglobule 
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

 17407188(cotyledon)
19525416(leaf (wt and clpr4-1 mutant))
20018591(weak Cu-2+ binding (mitochondria - cell culture))
19995723(chloroplast reference proteome)
21311031(mitochondria)
21173025(root proteome)
21515685(GreenCut2)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help