PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT4G04950.1   thioredoxin family protein
Lab Annot. thioredoxin protein
Mapman: 21.1 redox.thioredoxin
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G32580.1 11Arabidopsis thaliana7E-9816191930 (0)_
AT3G15660.1 11Arabidopsis thaliana4E-30107456890 (59)M
AT3G15660.2 11Arabidopsis thaliana4E-30107456889 (58)M
Os10g35720.1 7Oryza sativa0493677830 (30)_
Os10g35720.2 7Oryza sativa6E-170386647428 (28)_
Os03g63420.1 7Oryza sativa3E-2898467439 (39)C
v1_GRMZM2G090736_P01 4a53Zea mays049666794 (4)C
GRMZM2G090736_P01 3.21Zea mays0496667914 (8)C
v1_GRMZM2G131769_P01 4a53Zea mays049466796 (6)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF5612(3) Glutaredoxin(4) HyaE(1) SH3BGR(3) Thioredoxin(1) Thioredoxin_2(1) Thi
TargetP: Cytoplasm (Class 2 C0.116; M0.091; S0.092; _0.770)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 488 aa (-cTP 429)
Molecular Weight 53.11 kDA(-cTP )
PI 5.01(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1875Detail       Total leaf [A. thaliana] total soluble wild-type
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2249Detail       seedlings [A. thaliana] total tissue gfs9
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2296Detail        [A. thaliana] Clp C1 WT
2297Detail        [A. thaliana] Clp C1 WT
2303Detail        [A. thaliana] Clp C1 WT
2306Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 19546170(mature pollen grains)
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help