PPDB

The Plant Proteome Database

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AT4G04620.1   Ubiquitin-like superfamily protein

Lab Annot. ATG8b - (ATG8/12 conjugation pathway)
Mapman: 29.5.2 protein.degradation.autophagy
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G04620.2 11Arabidopsis thaliana8E-881221001001 (1)_
AT4G04620.3 11Arabidopsis thaliana8E-881221001000 (0)_
AT4G21980.1 11Arabidopsis thaliana2E-7711890961 (1)_
Os08g09240.2 7Oryza sativa6E-7011783930 (0)_
Os08g09240.1 7Oryza sativa6E-7011783930 (0)_
Os07g32800.1 7Oryza sativa1E-6711980890 (0)M
Zm00001eb413320_P002 agpv5Zea mays2E-6911782920 (0)_
Zm00001eb413320_P006 agpv5Zea mays2E-6911782920 (0)_
Zm00001eb413320_P001 agpv5Zea mays2E-6911782920 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: APG12(1) Atg8(1)
TargetP: Cytoplasm (Class 3 C0.085; M0.199; S0.066; _0.706)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 122 aa (-cTP 52)
Molecular Weight 13.88 kDA(-cTP )
PI 8.61(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2238Detail       seedlings [A. thaliana] total tissue gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help