PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT4G04200.1   Microsomal signal peptidase 25 kDa subunit (SPC25)

Lab Annot. microsomal signal peptidase 25 kDa subunit (regulator?)
Mapman: 29.5.5.6.1* protein.degradation.serine protease.SF.S26
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G39960.1 11Arabidopsis thaliana3E-105197808461 (55)_
Os02g35720.1 7Oryza sativa2E-6217259700 (0)_
Os04g36859.1 7Oryza sativa1E-59176617318 (18)_
Os04g36859.2 7Oryza sativa2E-4315159721 (1)_
v1_GRMZM2G131321_P01 4a53Zea mays1E-59170637518 (17)_
Zm00001eb081650_P001 agpv5Zea mays1E-5917063750 (0)_
GRMZM2G131321_P01 3.21Zea mays1E-59170637523 (23)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: SPC25(1)
TargetP: Cytoplasm (Class 3 C0.018; M0.118; S0.237; _0.831)
Predotar:
Subcel. Location:
TM-HMM prediction: 2 TMs
Aramemnon: 2 TMs
TAT position:
Length 190 aa (-cTP 162)
Molecular Weight 21.23 kDA(-cTP )
PI 8.90(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

16247729(mature Pollen)
19546170(mature pollen grains)
21988472(vacuole (unfiltered data))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help