PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT4G03430.1 pre-mRNA splicing factor-like protein

Lab Annot.

RNA splicing factor, transesterification mechanism - EMB2770/STA1 (STABILIZED1);
Mapman: 27.1.1 RNA.processing.splicing

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G03430.2 11 Arabidopsis thaliana 0 1029 100 100 0 (0) _
AT4G03430.3 11 Arabidopsis thaliana 0 1029 100 100 0 (0) _
AT4G38590.2 11 Arabidopsis thaliana 3E-64 211 59 68 1 (1) S
Os10g35550.1 7 Oryza sativa 0 1047 73 83 2 (2) _
Os01g15860.1 7 Oryza sativa 0 858 63 73 0 (0) C
Os03g19560.1 7 Oryza sativa 3E-13 348 22 39 0 (0) C
v1_GRMZM2G401561_P01 4a53 Zea mays 0 936 78 88 11 (11) C
Zm00001eb137760_P002 agpv5 Zea mays 0 936 78 88 0 (0) C
Zm00001eb137760_P001 agpv5 Zea mays 0 936 78 88 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF3808(4) FAT(3) HAT(3) PRP1_N(1) TPR_1(2) TPR_14(14) TPR_16(7) TPR_17(4) TPR_1
TargetP:	Cytoplasm (Class 5 C0.421; M0.061; S0.007; _0.476)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	1029 aa (-cTP 974)
Molecular Weight	115.57 kDA(-cTP )
PI	6.86(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1122	Detail								leaf [A. thaliana]	chloroplast plastoglobule	wild-type
1123	Detail								leaf [A. thaliana]	chloroplast plastoglobule	wild-type
1423	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 3)
1426	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 3)
2249	Detail								seedlings [A. thaliana]	total tissue	gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
21166475(cytosolic-fractions-crude)
20813957(SUMO proteome)

Comparative Proteomics Data