PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT4G02990.1   Mitochondrial transcription termination factor family protein
Lab Annot. mTERF domain protein RUGOSA2 (dual targeted chloro&mito)
Mapman: 27.3.99 RNA.regulation of transcription.unclassified
Curated Location mitochondria (Pubmed: 23198870 21464319 21790815 )
plastid (Pubmed: 23198870 21464319 21790815 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G02990.2 11Arabidopsis thaliana05411001000 (0)M
AT2G44020.1 11Arabidopsis thaliana7E-15240451750 (0)M
AT2G21710.1 11Arabidopsis thaliana1E-4034827500 (0)_
Os05g33500.1 7Oryza sativa041665825 (5)C
Os02g54200.2 6Oryza sativa8E-13842847680 (0)M
Os02g54200.1 7Oryza sativa3E-13742847680 (0)M
Zm00001eb349900_P001 agpv5Zea mays044661800 (0)C
Zm00001eb349900_P003 agpv5Zea mays044661800 (0)C
GRMZM2G029933_P01 3.21Zea mays0446618065 (45)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: mTERF(2) UBA_6(2)
TargetP: Mitochondria (Class 5 C0.191; M0.264; S0.004; _0.098)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 541 aa (-cTP 462)
Molecular Weight 61.55 kDA(-cTP )
PI 6.33(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
542Detail       leaf [A. thaliana] stroma (FPLC) >500 kDa (HMB) wild-type
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

 19334764(plasma membrane (cell culture))
20423899(chloroplast)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help