PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT4G02570.1   cullin 1

Lab Annot. ATCUL1 (CULLIN 1)
Mapman: 29.5.11.4.3.3 protein.degradation.ubiquitin.E3.SCF.cullin
Curated Location
TAIR curated location: condensed nuclear chromosome & nucleus & spindle & phragmoplast & cytoplasm11387208,0012058059
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G02570.2 11Arabidopsis thaliana073810010025 (13)_
AT4G02570.3 11Arabidopsis thaliana073810010025 (13)_
AT4G02570.4 11Arabidopsis thaliana073810010025 (13)_
Os01g27150.1 7Oryza sativa074080900 (0)_
Os01g27150.2 7Oryza sativa073780900 (0)_
Os05g05700.1 7Oryza sativa074079897 (7)_
GRMZM2G166089_P05 3.21Zea mays0740799017 (17)_
v1_GRMZM2G166089_P05 4a53Zea mays0740799016 (16)_
Zm00001eb354170_P002 agpv5Zea mays074079900 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Cullin(1) Cullin_Nedd8(1) DUF3232(2) DUF5442(2)
TargetP: Cytoplasm (Class 1 C0.118; M0.088; S0.112; _0.942)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 738 aa (-cTP 731)
Molecular Weight 86.30 kDA(-cTP )
PI 6.71(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1441Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 3)
1530Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP wild-type (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
2251Detail       seedlings [A. thaliana] total tissue wild-type
2268Detail       seedlings [A. thaliana] total tissue wild-type
2296Detail        [A. thaliana] Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help