PPDB

PPDB	The Plant Proteome Database

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AT4G02260.1 RELA/SPOT homolog 1

Lab Annot.

RelA/SpoT homologue 1 (RSH1) - no ppGpp synthase activity
Mapman: 30.50* signalling.plastid

Curated Location

plastid (Pubmed: 23198870 18535838 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G02260.2 11 Arabidopsis thaliana 0 884 99 99 21 (11) C
AT4G02260.4 11 Arabidopsis thaliana 0 884 98 98 0 (0) C
AT4G02260.3 11 Arabidopsis thaliana 0 808 99 99 21 (11) C
Os03g22160.1 7 Oryza sativa 0 883 63 73 0 (0) C
Os07g42160.1 7 Oryza sativa 1E-60 360 38 54 0 (0) C
Os08g35620.1 7 Oryza sativa 1E-56 352 37 57 0 (0) C
Zm00001eb016330_P003 agpv5 Zea mays 0 616 67 78 0 (0) _
v1_GRMZM2G025113_P01 4a53 Zea mays 0 637 64 75 1 (1) _
Zm00001eb016330_P001 agpv5 Zea mays 0 849 63 73 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	ACT(1) ACT_4(1) HD(1) HD_4(1) RelA_SpoT(1) Spore_Cse60(1) T4_Rnl2_C(2) TGS(1)
TargetP:	Chloroplast (Class 2 C0.886; M0.007; S0.095; _0.195)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	884 aa (-cTP 829)
Molecular Weight	98.69 kDA(-cTP 93.09)
PI	6.65(-cTP 6.54)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
303	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
869	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
870	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
871	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
2289	Detail								[A. thaliana]		Clp C1 TRAP
2291	Detail								[A. thaliana]		Clp C1 TRAP
2305	Detail								[A. thaliana]		Clp C1 TRAP
2306	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

18431481(chloroplast)

Comparative Proteomics Data