PPDB

PPDB	The Plant Proteome Database

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AT4G01890.1 Pectin lyase-like superfamily protein

Lab Annot.

Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G02460.1 11 Arabidopsis thaliana 0 408 75 86 0 (0) M
AT1G56710.1 11 Arabidopsis thaliana 3E-168 436 54 72 0 (0) S
AT1G48100.1 11 Arabidopsis thaliana 7E-165 391 56 73 0 (0) M
Os01g19170.1 7 Oryza sativa 8E-166 388 58 75 0 (0) S
Os05g20020.1 7 Oryza sativa 3E-161 431 52 71 0 (0) S
Os01g22590.1 7 Oryza sativa 2E-137 418 49 66 0 (0) C
v1_GRMZM2G170388_P01 4a53 Zea mays 2E-163 387 57 75 1 (1) S
Zm00001eb129970_P001 agpv5 Zea mays 2E-163 387 57 75 0 (0) S
GRMZM2G170388_P01 3.21 Zea mays 2E-163 387 57 75 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Beta_helix(1) Glyco_hydro_28(1) NosD(1) Pectate_lyase_3(2)
TargetP:	Secreted (Class 1 C0.019; M0.025; S0.920; _0.059)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	467 aa (-cTP 384)
Molecular Weight	50.68 kDA(-cTP )
PI	8.09(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data