PPDB

 The Plant Proteome Database

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AT4G01650.1   Polyketide cyclase / dehydrase and lipid transport protein
Lab Annot. HCF145-like
Mapman: 35.2 not assigned.unknown
Curated Location plastid stroma (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G01650.3 11Arabidopsis thaliana9E-163221991000 (0)C
AT4G01650.2 11Arabidopsis thaliana8E-145201999911 (11)_
AT5G08720.1 11Arabidopsis thaliana2E-2118336531 (1)C
Os01g74010.1 7Oryza sativa4E-5418349734 (4)C
Os01g74010.2 7Oryza sativa4E-5418349734 (4)C
Os03g62170.2 7Oryza sativa2E-2018134550 (0)C
Zm00001eb139840_P002 agpv5Zea mays5E-5316750730 (0)C
Zm00001eb139840_P004 agpv5Zea mays1E-5215752730 (0)C
Zm00001eb139840_P003 agpv5Zea mays1E-5215752730 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: COXG(2) Polyketide_cyc(1) Polyketide_cyc2(1)
TargetP: Chloroplast (Class 1 C0.934; M0.013; S0.015; _0.081)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 288 aa (-cTP 237)
Molecular Weight 32.62 kDA(-cTP 27.16)
PI 5.42(-cTP 4.96)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1462Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 2)
1481Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 1)
1485Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 3)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1949Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1999Detail       leaf [A. thaliana] stroma ClpS stromaclpS1
2000Detail       leaf [A. thaliana] stroma ClpS stromaclpS1
2001Detail       leaf [A. thaliana] stroma ClpS stromaclpS1
2113Detail       leaf [A. thaliana] Stroma stromawt

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help