PPDB

The Plant Proteome Database

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AT4G01037.1   Ubiquitin carboxyl-terminal hydrolase family protein

Lab Annot. homologue of maize WTF1
Mapman: 27.4 RNA.RNA binding
Curated Location plastid stroma (Pubmed: 23198870 19251672 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G62990.1 11Arabidopsis thaliana2E-7033939590 (0)C
AT3G63090.1 11Arabidopsis thaliana9E-5433737550 (0)_
AT5G21970.1 11Arabidopsis thaliana8E-5333735530 (0)M
Os05g49610.1 7Oryza sativa046664798 (8)C
Os11g34160.1 7Oryza sativa5E-5134733520 (0)M
Os04g24710.1 7Oryza sativa6E-4940932510 (0)C
v1_GRMZM2G403797_P01 4a53Zea mays0504597441 (41)_
GRMZM2G403797_P01 3.21Zea mays0504597463 (62)_
Zm00001eb344150_P001 agpv5Zea mays050459740 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: BUD22(1) DUF5024(1) Nop14(1) PORR(1) SDA1(1)
TargetP: Chloroplast (Class 4 C0.571; M0.097; S0.028; _0.256)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 528 aa (-cTP 455)
Molecular Weight 61.23 kDA(-cTP 53.10)
PI 6.27(-cTP 5.49)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
542Detail       leaf [A. thaliana] stroma (FPLC) >500 kDa (HMB) wild-type
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
870Detail       leaf [A. thaliana] chloroplast stromawild-type
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1575Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))
20423899(chloroplast)

Comparative Proteomics Data


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