PPDB

PPDB	The Plant Proteome Database

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AT4G00800.1 transducin family protein / WD-40 repeat family protein

Lab Annot.

WD-40 repeat domain
Mapman: 35.1 not assigned.no ontology

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G00800.2 11 Arabidopsis thaliana 0 1565 100 100 0 (0) _
Os02g03220.1 7 Oryza sativa 2E-126 469 47 66 0 (0) _
Zm00001eb230740_P002 agpv5 Zea mays 0 1831 46 63 0 (0) _
Zm00001eb230740_P001 agpv5 Zea mays 0 1831 46 63 0 (0) _
v1_GRMZM2G344212_P02 4a53 Zea mays 0 863 43 61 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	ANAPC4_WD40(1) Clathrin(3) QueF(3) Vps8(3) WD40(1) zf-RING_2(1) Zn_ribbon_17(1)
TargetP:	Cytoplasm (Class 3 C0.303; M0.036; S0.003; _0.784)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	1913 aa (-cTP 1820)
Molecular Weight	211.99 kDA(-cTP )
PI	5.24(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
94	Detail								root [B. rapa]	plastid stroma
1484	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 2)
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1988	Detail								leaf [A. thaliana]	plastid	Prep1_Prep2
2013	Detail								leaf [A. thaliana]	total leaf tissue	wt
2148	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2245	Detail								seedlings [A. thaliana]	total tissue	wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

21166475(cytosolic-fractions-crude)
20733066(phosphoproteome-ABA-leaf)

Comparative Proteomics Data