PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT4G00690.1   UB-like protease 1B

Lab Annot. SUMO-isopeptidase-like (SCULP1-like) (Homolog of ESD4)
Mapman: 29.5.3.3.1* protein.degradation.cysteine protease.CE.C48
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G15880.1 11Arabidopsis thaliana4E-12624670810 (0)C
AT3G06910.1 11Arabidopsis thaliana4E-10323861780 (0)_
AT4G15880.2 11Arabidopsis thaliana3E-7716767790 (0)C
Os01g25370.1 7Oryza sativa2E-9923761760 (0)M
Os03g22400.1 7Oryza sativa2E-9623958740 (0)M
Os03g29630.1 7Oryza sativa5E-9230848640 (0)_
Zm00001eb341180_P002 agpv5Zea mays9E-10123762750 (0)_
GRMZM2G012601_P01 3.21Zea mays9E-10123762750 (0)_
v1_GRMZM2G012601_P03 4a53Zea mays9E-10123762750 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Peptidase_C48(1)
TargetP: Chloroplast (Class 1 C0.960; M0.137; S0.001; _0.055)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 341 aa (-cTP 295)
Molecular Weight 39.69 kDA(-cTP 34.34)
PI 9.65(-cTP 9.20)

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

15028209(Total chloroplast)
19995723(chloroplast reference proteome)
21515685(GreenCut2)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help