PPDB

The Plant Proteome Database

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AT4G00660.1   RNAhelicase-like 8

Lab Annot. DEAD box RNA helicase (RH08)
Mapman: 27.5* RNA.DEAD/DEAH BOX helicase
Curated Location not plastid (Pubmed: 19880609 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G00660.2 11Arabidopsis thaliana050510010036 (8)M
AT2G45810.1 11Arabidopsis thaliana0528768386 (41)_
AT3G61240.1 11Arabidopsis thaliana0505808760 (11)M
Os02g42860.1 7Oryza sativa051181866 (6)_
Os04g45040.1 7Oryza sativa050579848 (8)_
Os04g45040.3 7Oryza sativa050579848 (8)_
GRMZM2G086116_P01 3.21Zea mays0439869210 (10)_
GRMZM2G129007_P01 3.21Zea mays044485918 (8)_
v1_GRMZM2G129007_P01 4a53Zea mays044485915 (5)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: CMS1(1) DEAD(1) Helicase_C(2) SARAF(1)
TargetP: Mitochondria (Class 4 C0.043; M0.775; S0.007; _0.423)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 505 aa (-cTP 417)
Molecular Weight 57.69 kDA(-cTP )
PI 8.40(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2237Detail       seedlings [A. thaliana] total tissue gfs9
2290Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2300Detail        [A. thaliana] Clp C1 TRAP
2305Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

19200160(flower-stage 12)
19546170(mature pollen grains)
19334764(plasma membrane (cell culture))
21166475(cytosolic-fractions-crude)

Comparative Proteomics Data


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