PPDB

 The Plant Proteome Database

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AT4G00620.1   Amino acid dehydrogenase family protein
Lab Annot. tetrahydrofolate dehydrogenase/cyclohydrolase; Methenyltetrahydrofolate cyclohydrolase
Mapman: 25.5 C1-metabolism.Methylenetetrahydrofolate dehydrogenase & Methenyltetrahydrofolate cyclohydrolase
Curated Location plastid stroma (Pubmed: 23198870 18431481 ) (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G00600.1 11Arabidopsis thaliana035674780 (0)C
AT2G38660.1 11Arabidopsis thaliana7E-14330465793 (3)M
AT2G38660.3 11Arabidopsis thaliana7E-14330465793 (3)M
Os02g02850.1 7Oryza sativa2E-17529279916 (6)C
Os09g15810.1 7Oryza sativa3E-13731061770 (0)M
Os05g05830.1 7Oryza sativa6E-135287637950 (50)_
Zm00001eb208240_P002 agpv5Zea mays1E-17436966790 (0)C
AC233922.1_FGP005 3.21Zea mays1E-174369667980 (78)C
v1_AC233922.1_FGP005 4a53Zea mays1E-174369667946 (46)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: THF_DHG_CYH(1) THF_DHG_CYH_C(1)
TargetP: Chloroplast (Class 2 C0.880; M0.198; S0.011; _0.063)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 360 aa (-cTP 300) (-lTP 257)
Molecular Weight 38.74 kDA(-cTP 32.33)(-lTP 27.87)
PI 8.58(-cTP 6.69)(-lTP 6.668)

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
339Detail       leaf [A. thaliana] chloroplast stromawild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
544Detail       leaf [A. thaliana] stroma (FPLC) <600 kDa (LMA) wild-type
617Detail       leaf [A. thaliana] chloroplast stromawild-type
873Detail       leaf [A. thaliana] chloroplast stromawild-type
874Detail       leaf [A. thaliana] chloroplast stromawild-type
1175Detail       leaf [A. thaliana] co-IP RH3 stromawild-type
1392Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1397Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1457Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 3)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1941Detail       leaf [A. thaliana] stroma WT stromawild-type
1942Detail       leaf [A. thaliana] stroma WT stromawild-type
1945Detail       leaf [A. thaliana] stroma UVR stromaUVR
1946Detail       leaf [A. thaliana] stroma UVR stromawild-type
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1948Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1949Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1988Detail       leaf [A. thaliana] plastid Prep1_Prep2
2114Detail       leaf [A. thaliana] Stroma stromawt
2253Detail       seedlings [A. thaliana] total tissue atg5
2311Detail       leaf [A. thaliana] PG plastoglobule 
2314Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2316Detail       leaf [A. thaliana] PG plastoglobule 
2317Detail       leaf [A. thaliana] PG plastoglobule 
2318Detail       leaf [A. thaliana] PG plastoglobule 
2319Detail       leaf [A. thaliana] PG plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
19200160(flower-stage 12)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
21533090(plasmodesmata-crude)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)

Comparative Proteomics Data

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