PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT4G00450.1 RNA polymerase II transcription mediator

Lab Annot.

RNA polymerase II transcription mediators
Mapman: 27.2 RNA.transcription

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G00450.2 11 Arabidopsis thaliana 0 2235 100 100 0 (0) C
AT4G00450.3 11 Arabidopsis thaliana 0 2235 100 100 0 (0) C
Os07g45400.1 7 Oryza sativa 0 2286 43 61 0 (0) M
Os10g40260.1 7 Oryza sativa 0 2240 42 58 0 (0) _
Zm00001eb000520_P002 agpv5 Zea mays 0 1899 42 62 0 (0) M
Zm00001eb000520_P003 agpv5 Zea mays 0 2253 44 64 0 (0) M
v1_GRMZM2G114459_P02 4a53 Zea mays 0 2253 44 64 2 (2) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Med12(1)
TargetP:	Chloroplast (Class 3 C0.761; M0.258; S0.022; _0.103)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:	5 TMs
TAT position:
Length	2235 aa (-cTP 2224)
Molecular Weight	247.22 kDA(-cTP 245.96)
PI	8.95(-cTP 8.95)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1208	Detail								leaf [A. thaliana]	total leaf tissue	clpp3 null

* For details about the exprimental sources click here.

Published Proteomics Data

22060019(phosphoproteome - N-starved seedlings)

Comparative Proteomics Data