PPDB

The Plant Proteome Database

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AT4G00290.1   Mechanosensitive ion channel protein

Lab Annot. mechanosensitive ion channel MSL1
Mapman: 35.1 not assigned.no ontology
Curated Location mitochondria (Pubmed: 27505616 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G00234.1 11Arabidopsis thaliana026495980 (0)C
AT1G58200.1 11Arabidopsis thaliana4E-1219826470 (0)_
AT1G58200.2 11Arabidopsis thaliana4E-1219826470 (0)_
Os04g48940.3 7Oryza sativa1E-16245552700 (0)C
Os04g48940.1 7Oryza sativa9E-16244952710 (0)C
Os04g48940.2 7Oryza sativa9E-16244952710 (0)C
Zm00001eb073200_P002 agpv5Zea mays3E-16043151700 (0)M
Zm00001eb073200_P001 agpv5Zea mays3E-16043151700 (0)M
v1_GRMZM2G125494_P04 4a53Zea mays3E-16043151700 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: MS_channel(2)
TargetP: Mitochondria (Class 4 C0.461; M0.792; S0.006; _0.013)
Predotar:
Subcel. Location:
TM-HMM prediction: 4 TMs
Aramemnon: 5 TMs
TAT position:
Length 497 aa (-cTP 463)
Molecular Weight 53.88 kDA(-cTP )
PI 9.07(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
342Detail       leaf [A. thaliana] chloroplast low density membranewild-type
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
877Detail       leaf [A. thaliana] chloroplast stromawild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1618Detail        [A. thaliana] m48
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

12938931(Total chloroplast envelope)
18431481(chloroplast)
19546170(mature pollen grains)
20061580(chloroplast envelope (inner+outer))
21841088(mitochondria (2DE native gel))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help