PPDB

PPDB	The Plant Proteome Database

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AT4G00290.1 Mechanosensitive ion channel protein

Lab Annot.

mechanosensitive ion channel MSL1
Mapman: 35.1 not assigned.no ontology

Curated Location

mitochondria (Pubmed: 27505616 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G00234.1 11 Arabidopsis thaliana 0 264 95 98 0 (0) C
AT1G58200.1 11 Arabidopsis thaliana 4E-12 198 26 47 0 (0) _
AT1G58200.2 11 Arabidopsis thaliana 4E-12 198 26 47 0 (0) _
Os04g48940.3 7 Oryza sativa 1E-162 455 52 70 0 (0) C
Os04g48940.1 7 Oryza sativa 9E-162 449 52 71 0 (0) C
Os04g48940.2 7 Oryza sativa 9E-162 449 52 71 0 (0) C
Zm00001eb073200_P002 agpv5 Zea mays 3E-160 431 51 70 0 (0) M
Zm00001eb073200_P001 agpv5 Zea mays 3E-160 431 51 70 0 (0) M
v1_GRMZM2G125494_P04 4a53 Zea mays 3E-160 431 51 70 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	MS_channel(2)
TargetP:	Mitochondria (Class 4 C0.461; M0.792; S0.006; _0.013)
Predotar:
Subcel. Location:
TM-HMM prediction:	4 TMs
Aramemnon:	5 TMs
TAT position:
Length	497 aa (-cTP 463)
Molecular Weight	53.88 kDA(-cTP )
PI	9.07(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
342	Detail								leaf [A. thaliana]	chloroplast low density membrane	wild-type
451	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
877	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
1407	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1618	Detail								[A. thaliana]		m48
2325	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane	abc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

12938931(Total chloroplast envelope)
18431481(chloroplast)
19546170(mature pollen grains)
20061580(chloroplast envelope (inner+outer))
21841088(mitochondria (2DE native gel))

Comparative Proteomics Data