PPDB

 The Plant Proteome Database

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AT4G00090.1   Transducin/WD40 repeat-like superfamily protein
Lab Annot.
Mapman: 33.99 development.unspecified
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G32990.1 11Arabidopsis thaliana3E-0637121360 (0)_
AT3G42660.1 11Arabidopsis thaliana6E-0623027420 (0)_
Os03g64110.1 7Oryza sativa043762742 (2)S
Os03g64300.1 7Oryza sativa4E-0825324400 (0)_
Os05g44320.2 7Oryza sativa6E-0822322430 (0)M
GRMZM2G056916_P03 3.21Zea mays043461731 (1)S
GRMZM2G056916_P01 3.21Zea mays043461731 (1)S
Zm00001eb065090_P002 agpv5Zea mays043461730 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: ANAPC4_WD40(5) Ge1_WD40(3) Lactonase(2) LapA_dom(1) Nucleoporin_N(2) PD40(3) WD4
TargetP: Secreted (Class 1 C0.019; M0.045; S0.900; _0.052)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 430 aa (-cTP 367)
Molecular Weight 46.55 kDA(-cTP )
PI 8.70(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2236Detail       seedlings [A. thaliana] total tissue gfs9
2237Detail       seedlings [A. thaliana] total tissue gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

 16618929(UNKNOWN-LOPIT-callus)
19546170(mature pollen grains)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help