PPDB

The Plant Proteome Database

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AT3G63250.1   homocysteine methyltransferase 2

Lab Annot. homocysteine S-methyltransferase 2 (ATHMT-2)
Mapman: 13.1.3.4.11 amino acid metabolism.synthesis.aspartate family.methionine.S-adenosylmethionine synthetase
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G63250.3 11Arabidopsis thaliana03331001000 (0)_
AT3G63250.2 11Arabidopsis thaliana0281989911 (3)S
AT3G22740.1 11Arabidopsis thaliana1E-16332766810 (0)_
Os10g28630.1 7Oryza sativa2E-16132168800 (0)_
Os12g41390.1 7Oryza sativa2E-15932367814 (4)_
Os10g28630.2 7Oryza sativa3E-13828169800 (0)_
GRMZM2G117240_P01 3.21Zea mays3E-16132566815 (5)_
v1_GRMZM2G117240_P01 4a53Zea mays3E-16132566812 (2)_
Zm00001eb031360_P001 agpv5Zea mays3E-16132566810 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: S-methyl_trans(1)
TargetP: Cytoplasm (Class 2 C0.054; M0.084; S0.095; _0.879)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 333 aa (-cTP 323)
Molecular Weight 36.45 kDA(-cTP )
PI 5.04(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
2300Detail        [A. thaliana] Clp C1 TRAP
2303Detail        [A. thaliana] Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

18931141(peroxisomes- high&low purity (cell culture))
19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help