PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G62840.1   Small nuclear ribonucleoprotein family protein
Lab Annot.
Mapman: 27.1 RNA.processing
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G47640.1 11Arabidopsis thaliana2E-761091001006 (6)_
AT2G47640.4 11Arabidopsis thaliana2E-761091001006 (6)_
AT2G47640.2 11Arabidopsis thaliana1E-7310999996 (6)_
Os05g24970.1 7Oryza sativa1E-6810494972 (2)_
Os05g24970.2 7Oryza sativa4E-6810592962 (2)_
Os01g73604.1 7Oryza sativa2E-427491980 (0)_
GRMZM2G166985_P02 3.21Zea mays9E-6710293973 (3)_
v1_GRMZM2G166985_P02 4a53Zea mays9E-6710293979 (9)_
Zm00001eb426700_P001 agpv5Zea mays9E-6710293970 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Hfq(1) LSM(1)
TargetP: Cytoplasm (Class 2 C0.258; M0.099; S0.026; _0.861)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 109 aa (-cTP 57)
Molecular Weight 12.63 kDA(-cTP )
PI 9.94(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2240Detail       seedlings [A. thaliana] total tissue gfs9
2254Detail       leaf [A. thaliana] total seedlings gfs9
2255Detail       leaf [A. thaliana] total seedlings gfs9
2256Detail       leaf [A. thaliana] total seedlings gfs9
2257Detail       leaf [A. thaliana] total seedlings gfs9
2259Detail       leaf [A. thaliana] total seedlings gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help