PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G62580.1   Late embryogenesis abundant protein (LEA) family protein

Lab Annot. Late embryogenesis abundant protein (LEA) protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G72100.1 11Arabidopsis thaliana1E-1016928454 (2)S
AT1G22600.1 11Arabidopsis thaliana8E-0818925451 (1)S
Os11g44940.1 7Oryza sativa3E-9921564780 (0)S
Os12g37060.1 7Oryza sativa1E-9621467810 (0)S
Os11g44940.2 7Oryza sativa5E-7415565810 (0)S
Zm00001eb137060_P001 agpv5Zea mays4E-10921371820 (0)S
v1_GRMZM2G106906_P01 4a53Zea mays4E-10921371823 (3)S
GRMZM2G106906_P01 3.21Zea mays4E-10921371821 (1)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF2569(2) DUF4149(2) Glyco_trans_2_3(2)
TargetP: Secreted (Class 2 C0.002; M0.008; S0.969; _0.294)
Predotar:
Subcel. Location:
TM-HMM prediction: 5 TMs
Aramemnon: 4 TMs
TAT position:
Length 213 aa (-cTP 202)
Molecular Weight 23.58 kDA(-cTP )
PI 9.76(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1545Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1574Detail       leaf [A. thaliana] TiO2 thylakoid membranek2k3
1576Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1695Detail       Rosettes [A. thaliana] Thylakoids thylakoid membraneWild-type

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help