PPDB

PPDB	The Plant Proteome Database

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AT3G62310.1 RNA helicase family protein

Lab Annot.

RNA helicase, putative
Mapman: 27.1.2 RNA.processing.RNA helicase

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G47250.1 11 Arabidopsis thaliana 0 730 92 96 19 (15) _
AT3G62310.3 11 Arabidopsis thaliana 0 523 100 100 0 (0) _
AT3G62310.2 11 Arabidopsis thaliana 0 529 99 99 0 (0) _
Os03g19960.1 7 Oryza sativa 0 726 85 92 23 (23) _
Os03g19960.2 7 Oryza sativa 0 526 84 90 23 (23) _
Os08g24760.1 7 Oryza sativa 0 660 52 73 1 (1) _
v1_GRMZM2G385931_P02 4a53 Zea mays 0 725 85 93 60 (60) _
GRMZM2G385931_P02 3.21 Zea mays 0 725 85 93 87 (43) _
Zm00001eb015060_P001 agpv5 Zea mays 0 725 85 93 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AAA_19(1) AAA_22(1) AAA_30(1) AAA_7(1) ABC_tran(2) DEAD(1) DUF2075(1) HA2(1) Hel
TargetP:	Cytoplasm (Class 2 C0.041; M0.143; S0.074; _0.864)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	726 aa (-cTP 707)
Molecular Weight	82.69 kDA(-cTP )
PI	6.94(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1346	Detail								leaf [A. thaliana]	total tissue (5 day HL)	wild-type (rep. 2)
1347	Detail								leaf [A. thaliana]	total tissue (5 day HL)	wild-type (rep. 3)
1350	Detail								leaf [A. thaliana]	total tissue (5 day HL)	abck2xabck3 (rep. 3)
1441	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 3)
1531	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	wild-type (rep. 1)
1758	Detail								leaf [A. thaliana]	total leaf tissue	DXS_Flag+fosmidomycin
2015	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2286	Detail								[A. thaliana]		Clp C1 WT
2287	Detail								[A. thaliana]		Clp C1 WT
2300	Detail								[A. thaliana]		Clp C1 TRAP
2320	Detail								[A. thaliana]	Thylakoids plastoglobule

* For details about the exprimental sources click here.

Published Proteomics Data

15496452(nucleolus)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)

Comparative Proteomics Data