PPDB

The Plant Proteome Database

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AT3G61620.1   3'-5'-exoribonuclease family protein

Lab Annot. 3'-5'-exoribonuclease protein
Mapman: 28.99 DNA.unspecified
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G61620.2 11Arabidopsis thaliana1E-1802411001002 (2)_
AT4G27490.3 11Arabidopsis thaliana2E-2522229490 (0)_
AT4G27490.4 11Arabidopsis thaliana2E-2522229490 (0)_
Os09g07820.1 7Oryza sativa2E-13324277860 (0)_
Os09g07820.2 7Oryza sativa2E-13324277860 (0)_
Os09g07820.3 7Oryza sativa1E-12322378860 (0)_
GRMZM2G345039_P05 3.21Zea mays1E-13624278880 (0)_
GRMZM2G345039_P04 3.21Zea mays1E-13624278880 (0)_
v1_GRMZM2G345039_P04 4a53Zea mays1E-13624278882 (2)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: RNase_PH(1) RNase_PH_C(1)
TargetP: Cytoplasm (Class 3 C0.051; M0.311; S0.035; _0.872)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 241 aa (-cTP 171)
Molecular Weight 26.55 kDA(-cTP )
PI 5.40(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1460Detail       leaf [A. thaliana] chloroplast stromaclps (rep. 3)
1462Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 2)

* For details about the exprimental sources click here.

Published Proteomics Data

21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help