PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G61240.1   DEA(D/H)-box RNA helicase family protein

Lab Annot. DEAD box RNA helicase (RH12)
Mapman: 27.5* RNA.DEAD/DEAH BOX helicase
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G61240.2 11Arabidopsis thaliana049810010060 (11)M
AT2G45810.1 11Arabidopsis thaliana0528798486 (41)_
AT4G00660.2 11Arabidopsis thaliana0507798736 (8)M
Os04g45040.1 7Oryza sativa050077858 (8)_
Os04g45040.3 7Oryza sativa050077858 (8)_
Os04g45040.2 7Oryza sativa050077858 (8)_
v1_GRMZM2G129007_P01 4a53Zea mays044280895 (5)_
Zm00001eb044130_P002 agpv5Zea mays044280890 (0)_
Zm00001eb044130_P001 agpv5Zea mays044280890 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DEAD(1) Helicase_C(2) TFIIA(1)
TargetP: Mitochondria (Class 5 C0.045; M0.635; S0.010; _0.630)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 498 aa (-cTP 408)
Molecular Weight 56.77 kDA(-cTP )
PI 8.66(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1422Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2296Detail        [A. thaliana] Clp C1 WT
2297Detail        [A. thaliana] Clp C1 WT
2300Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2302Detail        [A. thaliana] Clp C1 WT
2304Detail        [A. thaliana] Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

19200160(flower-stage 12)
19546170(mature pollen grains)
19114538(guard cells Arabidopsis leaf)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help