PPDB

 The Plant Proteome Database

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AT3G61111.1   Zinc-binding ribosomal protein family protein
Lab Annot. 40S ribosomal protein S27-like
Mapman: 29.2.1.2.1.27 protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S27
Curated Location not plastid (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G61110.1 11Arabidopsis thaliana2E-48868288158 (119)_
AT2G45710.1 11Arabidopsis thaliana9E-47838389159 (120)_
AT5G47930.1 11Arabidopsis thaliana1E-45838187162 (122)_
Os04g27860.1 7Oryza sativa4E-3786778419 (19)_
Os02g27769.1 7Oryza sativa1E-1045758219 (19)_
Os04g32710.1 7Oryza sativa6E-1045738219 (19)_
Zm00001eb241090_P001 agpv5Zea mays8E-378677840 (0)_
Zm00001eb214990_P001 agpv5Zea mays8E-378677840 (0)_
GRMZM2G377600_P01 3.21Zea mays8E-3786778498 (94)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Ribosomal_S27e(1)
TargetP: Cytoplasm (Class 3 C0.273; M0.069; S0.065; _0.815)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 86 aa (-cTP 21)
Molecular Weight 9.59 kDA(-cTP )
PI 9.22(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1930Detail       leaf [A. thaliana] total leaf tissue Col_0 Wild-type
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2021Detail       leaf [A. thaliana] total leaf tissue  
2043Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2044Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2045Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2046Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2047Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2048Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2049Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2050Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2051Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2052Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2053Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2054Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2289Detail        [A. thaliana] Clp C1 TRAP
2299Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

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