PPDB

 The Plant Proteome Database

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AT3G60860.1   SEC7-like guanine nucleotide exchange family protein
Lab Annot. SEC7-like guanine nucleotide exchange protein
Mapman: 30.5 signalling.G-proteins
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G01960.1 11Arabidopsis thaliana017997183140 (91)_
AT4G38200.1 11Arabidopsis thaliana0180446657 (7)_
AT4G35380.1 11Arabidopsis thaliana0179846653 (0)_
Os03g14260.2 7Oryza sativa01814677939 (39)C
Os03g14260.1 7Oryza sativa01814677939 (39)C
Os07g37750.1 7Oryza sativa01200395845 (45)_
Zm00001eb388040_P002 agpv5Zea mays0151747670 (0)C
Zm00001eb388040_P001 agpv5Zea mays0151747670 (0)C
GRMZM2G092586_P01 3.21Zea mays0151747677 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DCB(3) DUF1981(3) DUF4602(1) Mon2_C(1) Sec7(1) Sec7_N(2)
TargetP: Chloroplast (Class 4 C0.618; M0.063; S0.022; _0.364)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon: 1 TMs
TAT position:
Length 1793 aa (-cTP 1790)
Molecular Weight 199.63 kDA(-cTP 199.34)
PI 5.37(-cTP 5.37)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2013Detail       leaf [A. thaliana] total leaf tissue wt
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2288Detail        [A. thaliana] Clp C1 WT
2290Detail        [A. thaliana] Clp C1 TRAP
2300Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 15276459(epidermis)
19546170(mature pollen grains)
21533090(plasmodesmata-crude)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help