PPDB

 The Plant Proteome Database

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AT3G60730.1   Plant invertase/pectin methylesterase inhibitor superfamily
Lab Annot.
Mapman: 10.8.99 cell wall.pectin*esterases.misc
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G45220.1 11Arabidopsis thaliana6E-134457476124 (7)S
AT1G11580.1 11Arabidopsis thaliana3E-133474456062 (29)S
AT1G11580.2 11Arabidopsis thaliana8E-13347445600 (0)_
Os07g47830.1 7Oryza sativa4E-13747546590 (0)S
Os01g21034.1 7Oryza sativa4E-133429476618 (18)_
Os08g34900.1 7Oryza sativa1E-12443945590 (0)S
Zm00001eb130500_P001 agpv5Zea mays8E-12743248640 (0)S
Zm00001eb130500_P002 agpv5Zea mays8E-12743248640 (0)S
v1_GRMZM2G136106_P01 4a53Zea mays8E-127432486458 (58)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Pectate_lyase_3(1) Pectinesterase(1) PMEI(1)
TargetP: Secreted (Class 1 C0.007; M0.019; S0.993; _0.033)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 519 aa (-cTP 495)
Molecular Weight 57.88 kDA(-cTP )
PI 9.38(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2237Detail       seedlings [A. thaliana] total tissue gfs9
2238Detail       seedlings [A. thaliana] total tissue gfs9
2258Detail       leaf [A. thaliana] total seedlings gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

 18436743(specific to seeds)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help