PPDB

The Plant Proteome Database

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AT3G60620.1   cytidinediphosphate diacylglycerol synthase 5

Lab Annot. CDP-Diacylglycerol Synthetase 5 (CDS5)
Mapman: 11.3.3 lipid metabolism.Phospholipid synthesis.phosphatidate cytidylyltransferase
Curated Location plastid (Pubmed: 23198870 20442275 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G60620.2 11Arabidopsis thaliana03341001000 (0)C
AT2G45150.1 11Arabidopsis thaliana040773820 (0)_
AT2G45150.3 11Arabidopsis thaliana040772810 (0)C
Os02g03460.1 7Oryza sativa6E-10628366790 (0)C
v1_GRMZM2G156983_P02 4a53Zea mays1E-13025871841 (1)C
Zm00001eb230950_P001 agpv5Zea mays1E-13025871840 (0)C
v1_GRMZM2G053711_P05 4a53Zea mays1E-13025871841 (1)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: CarS-like(1) CTP_transf_1(1) DUF3040(3)
TargetP: Chloroplast (Class 4 C0.487; M0.148; S0.010; _0.066)
Predotar:
Subcel. Location: Thylakoid membrane
TM-HMM prediction: 6 TMs
Aramemnon: 7 TMs
TAT position:
Length 399 aa (-cTP 373) (-lTP 331)
Molecular Weight 43.25 kDA(-cTP 40.35)(-lTP 35.54)
PI 9.31(-cTP 9.40)(-lTP 8.665)

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
342Detail       leaf [A. thaliana] chloroplast low density membranewild-type
877Detail       leaf [A. thaliana] chloroplast stromawild-type
1578Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3

* For details about the exprimental sources click here.

Published Proteomics Data

12938931(Total chloroplast envelope)
18431481(chloroplast)
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help