PPDB

 The Plant Proteome Database

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AT3G60600.1   vesicle associated protein
Lab Annot. VAP27-1 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1)
Mapman: 28.99 DNA.unspecified
Curated Location
TAIR curated location: integral to membrane & protein storage vacuole & endoplasmic reticulum membrane11907339,16227454
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G60600.2 11Arabidopsis thaliana7E-143194999921 (18)_
AT2G45140.1 11Arabidopsis thaliana5E-133241829036 (32)_
AT3G60600.3 11Arabidopsis thaliana4E-129179989819 (16)_
Os04g45190.1 6Oryza sativa8E-9625158777 (7)_
Os04g45190.2 6Oryza sativa2E-9525357765 (5)_
Os08g06020.1 7Oryza sativa3E-93234627912 (12)_
Zm00001eb172580_P002 agpv5Zea mays1E-9823763810 (0)_
v1_GRMZM2G104907_P01 4a53Zea mays1E-98237638116 (15)_
GRMZM2G104907_P01 3.21Zea mays1E-98237638110 (10)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: CCDC-167(1) CFSR(1) Motile_Sperm(1)
TargetP: Cytoplasm (Class 3 C0.177; M0.066; S0.105; _0.756)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 256 aa (-cTP 168)
Molecular Weight 28.47 kDA(-cTP )
PI 8.59(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1346Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 2)
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1393Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1494Detail       leaf [A. thaliana]  
1532Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP clps (rep. 1)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1544Detail       leaf [A. thaliana] TiO2 thylakoid membranek1xk3
1545Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1552Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1557Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1577Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
1578Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1581Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1582Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1583Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
2268Detail       seedlings [A. thaliana] total tissue wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

 16618929(ER-LOPIT-callus)
17317660(Plasma Membrane proteome)
17644812(plasma membrane - suspension cells)
18463617(suspension cells-phosphorylated proteins)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
19376835(leaf phosphoproteins)
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help