PPDB

 The Plant Proteome Database

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AT3G59950.1   Peptidase family C54 protein
Lab Annot. ATG4b - (ATG8/12 conjugation pathway)
Mapman: 29.5.2 protein.degradation.autophagy; 29.5.3.1.3* protein.degradation.cysteine protease.CA.C54
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G59950.4 11Arabidopsis thaliana03911001000 (0)M
AT3G59950.5 11Arabidopsis thaliana039399990 (0)C
AT2G44140.3 11Arabidopsis thaliana044575850 (0)C
Os04g58560.2 7Oryza sativa4E-15141055730 (0)C
Os04g58560.1 7Oryza sativa7E-15141055730 (0)_
Os03g27350.3 7Oryza sativa3E-14638956730 (0)M
GRMZM2G064212_P01 3.21Zea mays6E-14642652690 (0)_
Zm00001eb065800_P002 agpv5Zea mays6E-14642652690 (0)_
Zm00001eb065800_P004 agpv5Zea mays6E-14642652690 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Peptidase_C54(1)
TargetP: Chloroplast (Class 1 C0.953; M0.018; S0.002; _0.108)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 477 aa (-cTP 393) (-lTP 338)
Molecular Weight 52.20 kDA(-cTP 43.39)(-lTP 37.60)
PI 4.94(-cTP 4.77)(-lTP 4.740)

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

 21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help